關於「HISAT2 vs STAR」標籤，搜尋引擎有相關的訊息討論：

HISAT2 V.S. STAR - Biostars。

The main benefit of hisat2 is that is uses fewer resources than STAR and that it can better handler known SNPs if you make the aligner aware of them.Different alignment rates for Hisat2 and STAR, Hisat2 has lower ...Forum:Best RNA-Seq aligner: A comparison of mapping toolsHISAT2 or Tophat2 - BiostarsThe comparison between HISAT2 and Tophat2 - BioStarswww.biostars.org 的其他相關資訊： 。

Evaluation of Seven Different RNA-Seq Alignment Tools Based on ...。

2020年3月3日 · The two splice-aware aligners HISAT2 and STAR were compared for accuracy by mapping the reads against the reference genome without an ...： 。

nf-core/rnaseq: RNA sequencing analysis pipeline using ... - GitHub。

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and ... Get help on Slack Follow on Twitter Watch on YouTube ...： 。

Factorial study of the RNA-seq computational workflow identifies ...。

The alignment was performed independently using TopHat2 (26) v2.1.1 (wrapping Bowtie2 v.2.3.4.3), HISAT2 (27) v2.1.0 and STAR (28) v2.5.3a.： tw | tw。

Cloud accelerated alignment and assembly of full-length single-cell ...。

2019年12月30日 · Read alignment and transcript assembly are the core of RNA-seq analysis for ... The alignment tool - STAR or HISAT2 - is then executed using ...。

Alignment and mapping methodology influence transcript ...。

2020年9月7日 · We used Salmon in alignment mode to process the output from Bowtie2 and STAR. In tests on the initial simulated data, we also included RSEM.。

[PDF] Web-based bioinformatics workflows for end-to-end RNA-seq data ...。

uses RSEM for transcript quantification and EdgeR for differential analysis. ... MapSplice [15], QPALMA [16], STAR [17] and HISAT [18].。

[PDF] Comparison of RNA Sequencing Data Alignment and Gene ... - MDPI。

2019年4月3日 · We focused on two of the most popular sequence aligners, HISAT2 [12], and STAR [13], which superseded the once ubiquitous TopHat aligner program ...： 。

HSRA: Hadoop-based spliced read aligner for RNA sequencing data。

2018年7月31日 · HSRA has been built upon the Hadoop MapReduce framework and ... Therefore, we have selected HISAT2 as the underlying aligner for HSRA in ...。

(PDF) HISAT: A fast spliced aligner with low memory requirements。

2015年3月9日 · Tests on real and simulated data sets showed that HISAT is the fastest ... pass, STAR must build a new index for the splice junctions found.